Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
PB115
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
20 million cells per ChIP were crosslinked in 1% formaldehyde for 10 minutes at room temperature. Crosslinking was stopped with 125 mM Glycine and nuclei were extracted. Chromatin was sonicated using an Epishear Probe Sonicator (Active Motif) for 4 minutes at 40% power. c-MYC (D3N8F) antibody (Cell Signaling Technology) was used for immunoprecipitation and an input sample for each cell line served as the control. Libraries were constructed using a standard Illumina library construction protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
38518104
Reads aligned (%)
96.7
Duplicates removed (%)
6.3
Number of peaks
585 (qval < 1E-05)

mm9

Number of total reads
38518104
Reads aligned (%)
96.5
Duplicates removed (%)
6.4
Number of peaks
585 (qval < 1E-05)

Base call quality data from DBCLS SRA