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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BrdU
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
SRX217131
GSM1064515: HU WT Brdu rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BrdU
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
Splenic B Cells
ChIP
Brdu
cell type
In vitro activated B Cells
strain
129/Sv x C57BL/6
genotype
wildtype
growth duration
28 hr
chip antibody
GE Healthcare, RPN-202 and BD Biosciences, 347580
treatment protocol
10 mM hydroxyurea for 6 hrs
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30500518
Reads aligned (%)
91.3
Duplicates removed (%)
20.5
Number of peaks
299 (qval < 1E-05)
mm9
Number of total reads
30500518
Reads aligned (%)
91.3
Duplicates removed (%)
20.6
Number of peaks
315 (qval < 1E-05)
Base call quality data from
DBCLS SRA