Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa2

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Splenic B Cells
ChIP
RPA
cell type
In vitro activated B Cells
strain
129/Sv x C57BL/6
genotype
53BP1 KO
growth duration
72 hr
chip antibody
Calbiochem, RPA34-20
treatment protocol
0 mM hydroxyurea for 6 hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
15733792
Reads aligned (%)
90.5
Duplicates removed (%)
16.9
Number of peaks
4568 (qval < 1E-05)

mm9

Number of total reads
15733792
Reads aligned (%)
90.3
Duplicates removed (%)
17.0
Number of peaks
4614 (qval < 1E-05)

Base call quality data from DBCLS SRA