SRX217120
GSM1064504: HU WT Smc5 rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc5

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Splenic B Cells
ChIP
Smc5
cell type
In vitro activated B Cells
strain
129/Sv x C57BL/6
genotype
wildtype
growth duration
28 hr
chip antibody
Calbiochem, DR1030
treatment protocol
10 mM hydroxyurea for 6 hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33512623
Reads aligned (%)
81.2
Duplicates removed (%)
35.8
Number of peaks
580 (qval < 1E-05)

mm9

Number of total reads
33512623
Reads aligned (%)
81.1
Duplicates removed (%)
35.9
Number of peaks
587 (qval < 1E-05)

Base call quality data from DBCLS SRA