SRX217116
GSM1064500: HU WT RPA rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa2

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Splenic B Cells
ChIP
RPA
cell type
In vitro activated B Cells
strain
129/Sv x C57BL/6
genotype
wildtype
growth duration
28 hr
chip antibody
Calbiochem, RPA34-20
treatment protocol
10 mM hydroxyurea for 6 hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37537994
Reads aligned (%)
93.1
Duplicates removed (%)
55.9
Number of peaks
444 (qval < 1E-05)

mm9

Number of total reads
37537994
Reads aligned (%)
93.0
Duplicates removed (%)
56.0
Number of peaks
525 (qval < 1E-05)

Base call quality data from DBCLS SRA