Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Others
Cell type
Epithelium, Corneal
MeSH Description
Stratified squamous epithelium that covers the outer surface of the CORNEA. It is smooth and contains many free nerve endings.

Attributes by original data submitter

Sample

source_name
Human corneal epithelial cells (HCE)
cell type
Human corneal epithelial cells (HCE)
chip antibody
H3K4me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
160445007
Reads aligned (%)
79.5
Duplicates removed (%)
57.1
Number of peaks
70175 (qval < 1E-05)

hg19

Number of total reads
160445007
Reads aligned (%)
79.4
Duplicates removed (%)
57.2
Number of peaks
69941 (qval < 1E-05)

Base call quality data from DBCLS SRA