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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
SRX216758
daf-2 daf-16 SWSN-1::GFP ChIP IN
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
strain
GR1909
label
daf-2_daf-16_SWSN-1::GFP_IN
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
6724329
Reads aligned (%)
94.4
Duplicates removed (%)
4.6
Number of peaks
449 (qval < 1E-05)
ce10
Number of total reads
6724329
Reads aligned (%)
94.4
Duplicates removed (%)
4.6
Number of peaks
449 (qval < 1E-05)
Base call quality data from
DBCLS SRA