Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Lung

Cell type

A549

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma

Sample

source_name

A549_SPDEF_input

cell line background

A549

cell type

lung carcinoma cells

infected with

lentivirus expressing NKX2-1

chip antibody

none (input)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP was performed as described in Maeda et al., J Clin Invest. (2012) doi: 10.1172/JCI64048 Illumina sequencing libraries were prepared as described in Maeda et al., J Clin Invest. (2012) doi: 10.1172/JCI64048

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

15542485

Reads aligned (%)

99.0

Duplicates removed (%)

3.2

Number of peaks

329 (qval < 1E-05)

hg19

Number of total reads

15542485

Reads aligned (%)

98.2

Duplicates removed (%)

3.9

Number of peaks

362 (qval < 1E-05)