SRX2163142
GSM2310319: RT4 FoxA1 ChIP-seq rep2 (JP508); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Others
Cell type
RT4
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma Transitional Cell

Attributes by original data submitter

Sample

source_name
RT4 cells
cell type
RT4
tissue type
transitional cell papilloma
Stage
adult
chip antibody
FoxA1 (ab5089)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not applicable Sequencing libraries were generated using Rubicon ThruPLEX DNA-seq kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
18292602
Reads aligned (%)
58.5
Duplicates removed (%)
26.4
Number of peaks
45693 (qval < 1E-05)

hg38

Number of total reads
18292602
Reads aligned (%)
60.0
Duplicates removed (%)
25.0
Number of peaks
45926 (qval < 1E-05)

Base call quality data from DBCLS SRA