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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: RT4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2163139
GSM2310316: RT4 input rep1 (JP498); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Others
Cell type
RT4
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma Transitional Cell
Attributes by original data submitter
Sample
source_name
RT4 cells
cell type
RT4
tissue type
transitional cell papilloma
Stage
adult
chip antibody
input DNA
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not applicable Sequencing libraries were generated using Rubicon ThruPLEX DNA-seq kit.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13479338
Reads aligned (%)
67.8
Duplicates removed (%)
6.1
Number of peaks
950 (qval < 1E-05)
hg19
Number of total reads
13479338
Reads aligned (%)
65.6
Duplicates removed (%)
7.8
Number of peaks
775 (qval < 1E-05)
Base call quality data from
DBCLS SRA