SRX2163139
GSM2310316: RT4 input rep1 (JP498); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
RT4
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma Transitional Cell

Attributes by original data submitter

Sample

source_name
RT4 cells
cell type
RT4
tissue type
transitional cell papilloma
Stage
adult
chip antibody
input DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not applicable Sequencing libraries were generated using Rubicon ThruPLEX DNA-seq kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13479338
Reads aligned (%)
67.8
Duplicates removed (%)
6.1
Number of peaks
950 (qval < 1E-05)

hg19

Number of total reads
13479338
Reads aligned (%)
65.6
Duplicates removed (%)
7.8
Number of peaks
775 (qval < 1E-05)

Base call quality data from DBCLS SRA