SRX216290
GSM1062368: ChIP STHdhQ111 IgG reps1and2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
STHdhQ111
strain
129SvEv/CD1
cell type
Embyronic E14 striatal derived
genotype
HdhQ111/Q111
passages
less than 15
chip antibody
IgG (Santa Cruz, sc-2027, lot J2909)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26544297
Reads aligned (%)
72.9
Duplicates removed (%)
13.3
Number of peaks
700 (qval < 1E-05)

mm9

Number of total reads
26544297
Reads aligned (%)
72.8
Duplicates removed (%)
13.4
Number of peaks
819 (qval < 1E-05)

Base call quality data from DBCLS SRA