Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

age
73 year
dev stage
adult
donor ID
ENCDO354AAA
sex
female
health state
human B cell non-Hodgkin's lymphoma
sample type
immortalized cell line
cell line
Karpas-422
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
49472747
Reads aligned (%)
95.0
Duplicates removed (%)
12.5
Number of peaks
32069 (qval < 1E-05)

hg19

Number of total reads
49472747
Reads aligned (%)
93.9
Duplicates removed (%)
14.1
Number of peaks
31682 (qval < 1E-05)

Base call quality data from DBCLS SRA