Antigen

Antigen Class

Histone

Antigen

H3K36me3

Cell type

Cell type Class

Blood

Cell type

KARPAS-422

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma Non-Hodgkins

Sample

age

73 year

dev stage

adult

donor ID

ENCDO354AAA

sex

female

health state

human B cell non-Hodgkin's lymphoma

sample type

immortalized cell line

cell line

Karpas-422

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

74204173

Reads aligned (%)

93.5

Duplicates removed (%)

5.6

Number of peaks

2019 (qval < 1E-05)

hg19

Number of total reads

74204173

Reads aligned (%)

92.4

Duplicates removed (%)

7.5

Number of peaks

1616 (qval < 1E-05)