Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

age
44 year
dev stage
adult
donor ID
ENCDO350AAA
sex
male
health state
B cell lymphoma
sample type
immortalized cell line
cell line
OCI-LY1
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
46664563
Reads aligned (%)
92.3
Duplicates removed (%)
28.3
Number of peaks
672 (qval < 1E-05)

hg19

Number of total reads
46664563
Reads aligned (%)
91.6
Duplicates removed (%)
29.9
Number of peaks
992 (qval < 1E-05)

Base call quality data from DBCLS SRA