Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
SU-DHL-6
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma

Attributes by original data submitter

Sample

age
43 year
dev stage
adult
donor ID
ENCDO353AAA
sex
male
health state
large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma
sample type
immortalized cell line
cell line
SUDHL6
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
32800892
Reads aligned (%)
95.0
Duplicates removed (%)
11.2
Number of peaks
24726 (qval < 1E-05)

hg19

Number of total reads
32800892
Reads aligned (%)
94.2
Duplicates removed (%)
12.0
Number of peaks
24605 (qval < 1E-05)

Base call quality data from DBCLS SRA