Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

age
73 year
dev stage
adult
donor ID
ENCDO354AAA
sex
female
health state
human B cell non-Hodgkin's lymphoma
sample type
immortalized cell line
cell line
Karpas-422
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
34097654
Reads aligned (%)
97.7
Duplicates removed (%)
28.7
Number of peaks
26304 (qval < 1E-05)

hg19

Number of total reads
34097654
Reads aligned (%)
97.4
Duplicates removed (%)
29.0
Number of peaks
26292 (qval < 1E-05)

Base call quality data from DBCLS SRA