Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

age
44 year
dev stage
adult
donor ID
ENCDO350AAA
sex
male
health state
B cell lymphoma
sample type
immortalized cell line
cell line
OCI-LY1
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/b4b48e6e-d14b-4359-96de-5e8c782c7bcf/@@download/attachment/TF_ChIP_Protocol_from_Shawn.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
21124914
Reads aligned (%)
97.4
Duplicates removed (%)
2.0
Number of peaks
832 (qval < 1E-05)

hg19

Number of total reads
21124914
Reads aligned (%)
96.6
Duplicates removed (%)
3.3
Number of peaks
981 (qval < 1E-05)

Base call quality data from DBCLS SRA