Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Blood

Cell type

OCI-LY-3

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma B-cell

Sample

age

52 year

dev stage

adult

donor ID

ENCDO355AAA

sex

male

health state

B cell lymphoma

sample type

immortalized cell line

cell line

OCI-LY3

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

32167753

Reads aligned (%)

97.5

Duplicates removed (%)

16.3

Number of peaks

42724 (qval < 1E-05)

hg19

Number of total reads

32167753

Reads aligned (%)

97.2

Duplicates removed (%)

16.7

Number of peaks

43742 (qval < 1E-05)