SRX2156940
GSM2308524: DNase-seq from OCI-LY7 (ENCLB763ZVD); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
OCI-LY-7
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

age
48 year
dev stage
adult
donor ID
ENCDO351AAA
sex
male
health state
B cell lymphoma
sample type
immortalized cell line
cell line
OCI-LY7
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
222755198
Reads aligned (%)
86.1
Duplicates removed (%)
25.3
Number of peaks
57862 (qval < 1E-05)

hg19

Number of total reads
222755198
Reads aligned (%)
85.4
Duplicates removed (%)
26.0
Number of peaks
56689 (qval < 1E-05)

Base call quality data from DBCLS SRA