Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
DOHH-2
Primary Tissue
Blood
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

age
60 year
dev stage
adult
donor ID
ENCDO352AAA
sex
male
health state
refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma
sample type
immortalized cell line
cell line
DOHH2
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
68671492
Reads aligned (%)
97.2
Duplicates removed (%)
16.9
Number of peaks
65875 (qval < 1E-05)

hg19

Number of total reads
68671492
Reads aligned (%)
96.9
Duplicates removed (%)
17.5
Number of peaks
65692 (qval < 1E-05)

Base call quality data from DBCLS SRA