Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

age
73 year
dev stage
adult
donor ID
ENCDO354AAA
sex
female
health state
human B cell non-Hodgkin's lymphoma
sample type
immortalized cell line
cell line
Karpas-422
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
44250621
Reads aligned (%)
96.1
Duplicates removed (%)
4.0
Number of peaks
1362 (qval < 1E-05)

hg19

Number of total reads
44250621
Reads aligned (%)
95.1
Duplicates removed (%)
5.6
Number of peaks
1340 (qval < 1E-05)

Base call quality data from DBCLS SRA