Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

KARPAS-422

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma Non-Hodgkins

Sample

age

73 year

dev stage

adult

donor ID

ENCDO354AAA

sex

female

health state

human B cell non-Hodgkin's lymphoma

sample type

immortalized cell line

cell line

Karpas-422

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

57471106

Reads aligned (%)

97.6

Duplicates removed (%)

9.3

Number of peaks

1500 (qval < 1E-05)

hg19

Number of total reads

57471106

Reads aligned (%)

96.7

Duplicates removed (%)

11.1

Number of peaks

1559 (qval < 1E-05)