Antigen

Antigen Class

Histone

Antigen

H3K36me3

Cell type

Cell type Class

Blood

Cell type

SU-DHL-6

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma

Sample

age

43 year

dev stage

adult

donor ID

ENCDO353AAA

sex

male

health state

large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma

sample type

immortalized cell line

cell line

SUDHL6

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg19

Number of total reads

85239862

Reads aligned (%)

95.6

Duplicates removed (%)

12.8

Number of peaks

1369 (qval < 1E-05)

hg38

Number of total reads

85239862

Reads aligned (%)

96.6

Duplicates removed (%)

11.5

Number of peaks

1724 (qval < 1E-05)