Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

age
44 year
dev stage
adult
donor ID
ENCDO350AAA
sex
male
health state
B cell lymphoma
sample type
immortalized cell line
cell line
OCI-LY1
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
68943974
Reads aligned (%)
96.5
Duplicates removed (%)
6.7
Number of peaks
2229 (qval < 1E-05)

hg19

Number of total reads
68943974
Reads aligned (%)
95.2
Duplicates removed (%)
8.8
Number of peaks
1626 (qval < 1E-05)

Base call quality data from DBCLS SRA