Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

age
10.5 day
dev stage
embryonic
donor ID
ENCDO956IXV
tissue
limb
sex
pooled male and female
health state
healthy
sample type
tissue
lab
Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/18580e80-0907-4258-a412-46bcc37bd040/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol%20MicroChIP.pdf general protocol: https://www.encodeproject.org/documents/1fcaab50-6ca0-4778-88cb-5f6b85170d21/@@download/attachment/Ren%20Lab%20ENCODE%20Tissue%20Fixation%20and%20Sonication%20Protocol%20MicroChIP.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
81090258
Reads aligned (%)
98.5
Duplicates removed (%)
9.6
Number of peaks
30508 (qval < 1E-05)

mm9

Number of total reads
81090258
Reads aligned (%)
98.5
Duplicates removed (%)
9.6
Number of peaks
30523 (qval < 1E-05)

Base call quality data from DBCLS SRA