Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
SU-DHL-6
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma

Attributes by original data submitter

Sample

age
43 year
dev stage
adult
donor ID
ENCDO353AAA
sex
male
health state
large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma
sample type
immortalized cell line
cell line
SUDHL6
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
88675476
Reads aligned (%)
97.0
Duplicates removed (%)
7.5
Number of peaks
2248 (qval < 1E-05)

hg19

Number of total reads
88675476
Reads aligned (%)
95.9
Duplicates removed (%)
9.5
Number of peaks
1776 (qval < 1E-05)

Base call quality data from DBCLS SRA