Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
Airway smooth muscle
NA
NA

Attributes by original data submitter

Sample

source_name
airway smooth muscle
cell type
airway smooth muscle
passages
3
chip antibody
H3K4me3 (Millipore, CS200 580)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
36787141
Reads aligned (%)
80.1
Duplicates removed (%)
48.1
Number of peaks
21970 (qval < 1E-05)

hg19

Number of total reads
36787141
Reads aligned (%)
79.5
Duplicates removed (%)
49.3
Number of peaks
21871 (qval < 1E-05)

Base call quality data from DBCLS SRA