Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
U87FO (Glioblastoma cell line)
cell line
U-87 MG (ATCC HTB-14) cells with Dox inducible FLAG-Omomyc
treatment
Untreated with Dox
chip antibody
FLAG® M2 mouse monoclonal antibody (Sigma-Adlrich, F1804)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
U87FO cells were processed according to Myers Lab ChIP-seq Protocol v041610.2. BT168FO cells were processed through the MAGnify Chromatin Immunoprecipitation System (Thermo Fisher). Libraries were prepared at the Istituto di Genomica Applicata (IGA) in Udine (http://www.appliedgenomics.org/) according to Illumina TruSeq DNA Sample Preparation Guide

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
36011354
Reads aligned (%)
89.8
Duplicates removed (%)
43.4
Number of peaks
970 (qval < 1E-05)

hg19

Number of total reads
36011354
Reads aligned (%)
88.9
Duplicates removed (%)
44.9
Number of peaks
919 (qval < 1E-05)

Base call quality data from DBCLS SRA