Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Blood
Cell type
Hematopoietic Stem Cells

Cell type information


MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by Original Data Submitter


source_name
Lin- BM progenitors (HSPCs)
cell type
C57BL/6
genotype
UTX WT
strain
C57BL/6
chip antibody
IgG (Diagenode, C15410206)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
HSPCs was extracted from bone marrowusing the Lineage Cell Depletion Kit (Miltenyi Biotec, cat. no. 130-090-858), Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-Seq libraries were prepared for sequencing using standard Illumina protocols

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
42399198
Reads aligned (%)
97.7
Duplicates removed (%)
52.0
Number of peaks
117 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA