Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
KH2 ES cells
cell type
Embryonic stem cells
developmental stage
Undifferentiated
cell line
KH2
chip antibody 1
none
chip antibody manufacturer 1
none
chip antibody 2
none
chip antibody manufacturer 2
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
30832831
Reads aligned (%)
97.7
Duplicates removed (%)
9.1
Number of peaks
741 (qval < 1E-05)

mm9

Number of total reads
30832831
Reads aligned (%)
97.5
Duplicates removed (%)
9.2
Number of peaks
819 (qval < 1E-05)

Base call quality data from DBCLS SRA