Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
KH2 ES cells
cell type
Embryonic stem cells
developmental stage
Undifferentiated
treatment
Overexpress Sox17EK-V5 tagged
cell line
KH2
chip antibody 1
none
chip antibody manufacturer 1
none
chip antibody 2
V5
chip antibody manufacturer 2
Invitrogen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
15788192
Reads aligned (%)
95.2
Duplicates removed (%)
9.7
Number of peaks
6100 (qval < 1E-05)

mm9

Number of total reads
15788192
Reads aligned (%)
95.1
Duplicates removed (%)
9.8
Number of peaks
6087 (qval < 1E-05)

Base call quality data from DBCLS SRA