Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Pluripotent stem cell
Cell type
Embryonic Stem Cells

Cell type information


MeSH Description
Cells derived from the BLASTOCYST INNER CELL MASS which forms before implantation in the uterine wall. They retain the ability to divide, proliferate and provide progenitor cells that can differentiate into specialized cells.

Attributes by Original Data Submitter


source_name
KH2 ES cells
cell type
Embryonic stem cells
developmental stage
Undifferentiated
treatment
Overexpress Sox17EK-V5 tagged
cell line
KH2
chip antibody 1
none
chip antibody manufacturer 1
none
chip antibody 2
V5
chip antibody manufacturer 2
Invitrogen

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
15788192
Reads aligned (%)
95.1
Duplicates removed (%)
9.8
Number of peaks
6083 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA