ChIP-Atlas: SRX214073

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: KH2 ES cells
cell type: Embryonic stem cells
developmental stage: Undifferentiated
treatment: Overexpress Sox2KE-V5 tagged
cell line: KH2
chip antibody 1: none
chip antibody manufacturer 1: none
chip antibody 2: V5
chip antibody manufacturer 2: Invitrogen

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 25720245
Reads aligned (%): 97.8
Duplicates removed (%): 8.7
Number of peaks: 14326 (qval < 1E-05)

mm9

Number of total reads: 25720245
Reads aligned (%): 97.6
Duplicates removed (%): 8.9
Number of peaks: 14253 (qval < 1E-05)

Base call quality data from DBCLS SRA