Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
KH2 ES cells
cell type
Embryonic stem cells
developmental stage
Undifferentiated
treatment
Overexpress Sox2-V5 tagged
cell line
KH2
chip antibody 1
none
chip antibody manufacturer 1
none
chip antibody 2
V5
chip antibody manufacturer 2
Invitrogen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
17095961
Reads aligned (%)
96.4
Duplicates removed (%)
10.9
Number of peaks
7884 (qval < 1E-05)

mm9

Number of total reads
17095961
Reads aligned (%)
96.2
Duplicates removed (%)
11.1
Number of peaks
7881 (qval < 1E-05)

Base call quality data from DBCLS SRA