Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_p300_ChIP
cell line
MCF7
cell type
breast cancer cells
chip antibody
p300 Antibody (C-20)
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
16516252
Reads aligned (%)
94.0
Duplicates removed (%)
3.7
Number of peaks
1029 (qval < 1E-05)

hg38

Number of total reads
16516252
Reads aligned (%)
96.3
Duplicates removed (%)
2.3
Number of peaks
888 (qval < 1E-05)

Base call quality data from DBCLS SRA