SRX213860
GSM1059379: Histone mark #5-8: input (Nkx2-1-neg. tumor), rep. #1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1059379
tester-control pair
I
strain
mixed 129/B6
tissue
lung
tumor type
adenocarcinoma
nkx2-1 status
deleted
gender
male
age
4 to 7 months
chip antibody
n/a
chip antibody catalog number
n/a

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
45741048
Reads aligned (%)
97.4
Duplicates removed (%)
13.0
Number of peaks
617 (qval < 1E-05)

mm9

Number of total reads
45741048
Reads aligned (%)
97.1
Duplicates removed (%)
12.9
Number of peaks
684 (qval < 1E-05)

Base call quality data from DBCLS SRA