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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Lung adenocarcinoma
ATCC
MeSH
RIKEN BRC
SRX213845
GSM1059364: Transcription factor #3: input, rep. #1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA
Attributes by original data submitter
Sample
GEO Accession
GSM1059364
tester-control pair
E
strain
mixed 129/B6
tissue
lung
tumor type
adenocarcinoma
nkx2-1 status
deleted
gender
female
age
4 to 7 months
chip antibody
n/a
chip antibody catalog number
n/a
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
36119503
Reads aligned (%)
98.3
Duplicates removed (%)
13.6
Number of peaks
522 (qval < 1E-05)
mm9
Number of total reads
36119503
Reads aligned (%)
98.0
Duplicates removed (%)
13.6
Number of peaks
587 (qval < 1E-05)
Base call quality data from
DBCLS SRA