Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ebf1

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
C10_C/EBPa.12h
cell line
C10 (HFATL-1 + ER-C/EBPa)
target
ChIP Ebf1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed as described previously (van Oevelen et al, 2008, PMID:20956564). Libraries were prepared according to manufacturer’s instructions with some modifications (Asp et al, 2011, PMID: 21551099). All libraries were sequenced on the Illumina 2AAIIx sequencer

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
35630238
Reads aligned (%)
50.0
Duplicates removed (%)
41.2
Number of peaks
1870 (qval < 1E-05)

mm9

Number of total reads
35630238
Reads aligned (%)
49.8
Duplicates removed (%)
41.3
Number of peaks
1961 (qval < 1E-05)

Base call quality data from DBCLS SRA