Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD3+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD3 Primary Cells
MARKERS
CD3+
DONOR_ID
RO 01679
DONOR_AGE
year 21
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000084

Sequenced DNA Library

library_name
Histone.DS22898
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
67401827
Reads aligned (%)
58.9
Duplicates removed (%)
35.3
Number of peaks
3953 (qval < 1E-05)

hg19

Number of total reads
67401827
Reads aligned (%)
55.0
Duplicates removed (%)
40.1
Number of peaks
2854 (qval < 1E-05)

Base call quality data from DBCLS SRA