SRX213414
GSM1058737: Luminal Input DNA ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
cell type
Luminal cells
state
virgin
chip antibody
none
strain
FVB/N

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32908371
Reads aligned (%)
98.4
Duplicates removed (%)
27.3
Number of peaks
298 (qval < 1E-05)

mm9

Number of total reads
32908371
Reads aligned (%)
98.3
Duplicates removed (%)
28.2
Number of peaks
290 (qval < 1E-05)

Base call quality data from DBCLS SRA