SRX213408
GSM1058731: MS pregnancy Input DNA ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
cell type
Mammary stem cells
state
12.5 days pregnant
chip antibody
none
strain
FVB/N

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35412063
Reads aligned (%)
98.1
Duplicates removed (%)
32.6
Number of peaks
356 (qval < 1E-05)

mm9

Number of total reads
35412063
Reads aligned (%)
98.0
Duplicates removed (%)
33.6
Number of peaks
371 (qval < 1E-05)

Base call quality data from DBCLS SRA