Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
cell type
Mammary stem cells
state
virgin
chip antibody
none
strain
FVB/N

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
38786879
Reads aligned (%)
98.4
Duplicates removed (%)
65.1
Number of peaks
281 (qval < 1E-05)

mm9

Number of total reads
38786879
Reads aligned (%)
98.3
Duplicates removed (%)
65.9
Number of peaks
316 (qval < 1E-05)

Base call quality data from DBCLS SRA