SRX213398
GSM1058721: LP Input DNA ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Luminal cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1058721
cell type
Luminal progenitor cells
state
virgin
chip antibody
none
strain
FVB/N

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37387194
Reads aligned (%)
98.4
Duplicates removed (%)
15.3
Number of peaks
385 (qval < 1E-05)

mm9

Number of total reads
37387194
Reads aligned (%)
98.3
Duplicates removed (%)
16.4
Number of peaks
401 (qval < 1E-05)

Base call quality data from DBCLS SRA