SRX212683
GSM1057526: IMR90 H3K18ac ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K18ac

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 fibroblasts
cell type
Primary lung fibroblasts
culture medium
DMEM supplemented with 10% FBS and 1X antibiotics
passage
Between 7 to 12
antibody
Custom 814 H3K18ac
cell line
IMR90
sirna treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
84263921
Reads aligned (%)
34.0
Duplicates removed (%)
19.2
Number of peaks
14606 (qval < 1E-05)

hg19

Number of total reads
84263921
Reads aligned (%)
33.8
Duplicates removed (%)
19.8
Number of peaks
14572 (qval < 1E-05)

Base call quality data from DBCLS SRA