SRX212646
GSM1057375: RPMI-8402 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RPMI 8402
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
RPMI-8402_Input
cell line
RPMI-8402
cell type
T-lymphoblastic leukemia (T-ALL)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20898269
Reads aligned (%)
98.5
Duplicates removed (%)
1.2
Number of peaks
708 (qval < 1E-05)

hg19

Number of total reads
20898269
Reads aligned (%)
97.6
Duplicates removed (%)
2.4
Number of peaks
686 (qval < 1E-05)

Base call quality data from DBCLS SRA