SRX212461
GSM1056952: H3K4me1 TregRA- C; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25+CD45RA- expanded memory regulatory T cells
donor
C
cell type
CD4+CD25+CD45RA- expanded memory regulatory T cells
chip antibody
H3K4me1 (abcam ab 8895)
chip antibody manufacturer
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9044791
Reads aligned (%)
98.2
Duplicates removed (%)
1.9
Number of peaks
132 (qval < 1E-05)

hg19

Number of total reads
9044791
Reads aligned (%)
97.3
Duplicates removed (%)
3.0
Number of peaks
172 (qval < 1E-05)

Base call quality data from DBCLS SRA