SRX212456
GSM1056947: H3K4me1 TconvRA+ D; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25-CD45RA+ expanded naive conventional T cells
donor
D
cell type
CD4+CD25-CD45RA+ expanded naive conventional T cells
chip antibody
H3K4me1 (abcam ab 8895)
chip antibody manufacturer
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40173815
Reads aligned (%)
96.9
Duplicates removed (%)
24.1
Number of peaks
44676 (qval < 1E-05)

hg19

Number of total reads
40173815
Reads aligned (%)
96.5
Duplicates removed (%)
24.8
Number of peaks
44330 (qval < 1E-05)

Base call quality data from DBCLS SRA