SRX212444
GSM1056935: RUNX1 Tconv G; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25- expanded conventional T cells
donor
G
cell type
CD4+CD25- expanded conventional T cells
chip antibody
RUNX1 (abcam ab 23980)
chip antibody manufacturer
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
40503253
Reads aligned (%)
81.6
Duplicates removed (%)
48.9
Number of peaks
3030 (qval < 1E-05)

hg38

Number of total reads
40503253
Reads aligned (%)
82.5
Duplicates removed (%)
47.5
Number of peaks
3102 (qval < 1E-05)

Base call quality data from DBCLS SRA