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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: mESCs, differentiated
ATCC
MeSH
RIKEN BRC
SRX212328
GSM1056599: D3 input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA
Attributes by original data submitter
Sample
source_name
differentiated ES cells
strain
derived from E14s, with the addition of hygromycin-thymidine kinase into the Oct4 locus. E14s are derived from strain 129/Ola mice.
cell line
OS25
differentiation
3 days retinoic acid
ip/input
MNase digested input
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
35147593
Reads aligned (%)
97.9
Duplicates removed (%)
5.5
Number of peaks
1440 (qval < 1E-05)
mm9
Number of total reads
35147593
Reads aligned (%)
97.8
Duplicates removed (%)
5.9
Number of peaks
1535 (qval < 1E-05)
Base call quality data from
DBCLS SRA