Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
Lung fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
fetal lung fibroblast
treatment
no treat
experiment
ChIP-seq
antibody
CTCF (Millipore 07-729)
restriction enzyme
no

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
21470011
Reads aligned (%)
28.7
Duplicates removed (%)
21.8
Number of peaks
35771 (qval < 1E-05)

hg38

Number of total reads
21470011
Reads aligned (%)
28.8
Duplicates removed (%)
21.7
Number of peaks
35903 (qval < 1E-05)

Base call quality data from DBCLS SRA