Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
Lung fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
fetal lung fibroblast
treatment
TNF-α (10ng/mL) 1hr
experiment
ChIP-seq
antibody
H3K4me3 (Abcam ab8580)
restriction enzyme
no

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
31590126
Reads aligned (%)
96.5
Duplicates removed (%)
37.2
Number of peaks
33182 (qval < 1E-05)

hg19

Number of total reads
31590126
Reads aligned (%)
96.3
Duplicates removed (%)
37.4
Number of peaks
33100 (qval < 1E-05)

Base call quality data from DBCLS SRA